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Meta's WearableQA Health Reasoning Benchmark (GitHub Repo)

Meta's WearableQA Health Reasoning Benchmark (GitHub Repo)

AI GitHub
Meta's new WearableQA benchmark challenges AI models to reason over 4,084 longitudinal health records from 200 real users.
What: The dataset contains wearable sensor data, blood biomarkers, and demographics across 4,084 multiple-choice questions designed to test both data correlation and physiological reasoning.
Why it matters: By utilizing authentic, noisy, and sparse real-world data rather than synthetic signals, this benchmark forces models to handle the messy reality of longitudinal health records, a crucial step for clinical AI.
Takeaway: Developers can use 'load_dataset("facebook/WearableQA", split="test")' via Hugging Face to evaluate model performance on complex, longitudinal health reasoning.
Deep dive
  • Features 4,084 multiple-choice questions based on real wearable data.
  • Includes 200 users with up to 500 days of history each.
  • Evaluates 16 reasoning types categorized into data reasoning versus physiological interpretation.
  • Supports various data serialization formats (row, col, csv, markdown) to test prompt sensitivity.
  • Dataset is released under a CC BY-NC 4.0 license with strict prohibitions against clinical or diagnostic use.
Decoder
  • Longitudinal record: Data collected from the same subject over an extended period.
  • Biomarkers: Indicators of health or biological state, usually measured via blood tests in this dataset.
  • Git LFS (Large File Storage): A Git extension for versioning large files that would otherwise exceed standard repository limits.
Original article

WearableQA: A Benchmark for Health Reasoning over Real-World Wearable Data

WearableQA is a benchmark of 4,084 ten-option multiple-choice questions built from the wearable time series, blood biomarkers, and demographics of 200 real users, each with up to about 500 days of daily measurements. Unlike benchmarks built on synthetic or idealized signals, it preserves authentic wearable distributions — device noise, missing days, and inter-individual variability included.

Each question asks a model to reason over one user's longitudinal record: to compute over the raw measurements, to interpret them physiologically, or both.

The 16 question types are organized along two complementary axes:

  • Data vs. health reasoning — computing over longitudinal measurements (correlations, excursion counts, recovery times, trend shapes) versus interpreting them physiologically (risk assessment, differential diagnosis, prognostic prediction).
  • Single- vs. cross-signal reasoning — reasoning within one metric versus integrating several.
Axis Split Count
Reasoning group data / health 2,724 / 1,360
Signal complexity single / cross 1,682 / 2,402
Grounding population / literature 3,154 / 930

Ground-truth answers are balanced uniformly across options A–J within each reasoning group, so the random baseline is 10%.

What's in this repository

Three files, in two formats — a ready-to-use rendered dataset, and the structured source it is rendered from.

File Size What it is
WearableQA.jsonl 306 MB Pre-rendered benchmark. One question per line, prompt already flattened to text. Use this to evaluate.
WearableQA_raw.json 39 MB Structured source. Questions plus the full per-user time series, so you can render the data any way you like.
render_raw.py 10 KB Renderer that turns the structured source into a .jsonl, in any of four serializations.

1. WearableQA.jsonl — the pre-rendered benchmark

4,084 lines, one JSON object per question. This is the file to use if you just want to run a model against the benchmark: every prompt is already a single string, so no assembly is needed.

{
  "id": "Lit_user_25_2024-08-06",
  "question": "You are given a user's demographics, wearable health sensor history, ...",
  "choices": {"A": "an elevated resting heart rate with low daily activity ...", "...": "..."},
  "answer": "A",
  "category": "fitness_prediction",
  "reasoning_group": "health",
  "signal": "cross",
  "grounding": "literature",
  "representation": "row"
}

The question string is assembled from these sections:

(instruction)
=== USER PROFILE ===                                age, sex, BMI, ethnicity
=== SENSOR DATA (row: one line per day) ===         up to ~500 days of daily metrics
=== BLOOD BIOMARKER PANEL ===                       17 biomarkers, where available
=== COHORT REFERENCE (population percentiles) ===   p10/p25/p50/p75/p90 for 5 metrics
=== QUESTION ===                                    the question stem
=== OPTIONS ===                                     A-J

Prompts are large: median ~86k characters, max ~124k. Budget context accordingly.

2. WearableQA_raw.json — the structured source

The same benchmark before rendering, so you can serialize the time series differently, feed the numbers to a tool-using agent, or build your own prompt template.

3. render_raw.py — the renderer

Rebuilds a .jsonl from the structured source. With no arguments it reproduces the released WearableQA.jsonl byte-for-byte.

Getting the data (Git LFS)

The dataset files are stored with Git LFS. Install LFS before cloning, or you will get small text pointer files instead of the data.

Quick start

The dataset is also on the Hugging Face Hub, which is the quickest way to get it — no clone, no LFS setup:

from datasets import load_dataset
ds = load_dataset("facebook/WearableQA", split="test")

Citation

@misc{lee2026wearableqa,
      title={{WearableQA}: A Benchmark for Health Reasoning over Real-World Wearable Data},
      author={Ji Soo Lee and Xilun Chen and Pierce Chuang and Ashish Shenoy and Jason Wei and Dohwan Ko and Hyunwoo J. Kim and Benoit Corda},
      year={2026},
      eprint={2609.05405},
      archivePrefix={arXiv},
      primaryClass={cs.CL},
      url={https://arxiv.org/abs/2609.05405},
}

License

The data is licensed under Creative Commons Attribution-Non Commercial 4.0 International (CC BY-NC 4.0), and subject to the following additional terms: (i) No re-identification or attempted re-identification; (ii) No use in connection with clinical, diagnostic, or treatment decisions; (iii) No use in a manner that is discriminatory, harmful, or misleading with respect to health-related outcomes; (iv) The Dataset is provided "as is", without warranties of any kind, whether express or implied, including without limitation accuracy, completeness, or fitness for a particular purpose, and is provided for research and benchmarking purposes only.

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